PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma3g01560.1
Common NameZOSMA_3G01560
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 181aa    MW: 20504.5 Da    PI: 9.468
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma3g01560.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.7e-091171571055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r RR+ri +++  L++l+P       +K++ a++L +A++Y+k+L+
  Zosma3g01560.1 117 RHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKYLK 157
                     89*****************87.....8*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.199107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-13108165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14111168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-13113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6117156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.30E-6130161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048462Biological Processcarpel formation
GO:2000012Biological Processregulation of auxin polar transport
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MDFEFFNPSN QEHMELVNMM MQMENLPEFS EPTATTTTTL LHPSVLDFTN GSITIPPTSP  60
PLAGHNQKSS TESTVSMREM IFRIAAMQPV YIDPETIKPP KRRNVKISKD PQSVSARHRR  120
ERISERIRIL QRLVPGGTKM DTASMLDEAI HYVKYLKTQV QSLERVATII PTTSTYRSNP  180
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417818.12e-58PREDICTED: transcription factor HEC2-like
SwissprotQ9FHA79e-47HEC1_ARATH; Transcription factor HEC1
TrEMBLA0A0K9P3W71e-130A0A0K9P3W7_Z
STRINGGSMUA_Achr9P15380_0015e-58(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.12e-40bHLH family protein